PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo19G0034700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 157aa    MW: 17194.3 Da    PI: 5.7597
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo19G0034700genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.2e-094794455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     +h+ +Er RR++iN+++  L++l+P +     k +  a  L + ++Y++sLq
  Spipo19G0034700 47 SHSLAERLRREKINEKMRCLQDLVPGC----YKAMGTAVLLDEIINYVQSLQ 94
                     79************************8....355999*************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.70E-104198No hitNo description
SuperFamilySSF474591.07E-1641108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.3454393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-1644105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-64794IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-94999IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
HPTASSRRGG RRGRCCGEEE EEEEDEVEMK TKEVVHVRAK RGQAMDSHSL AERLRREKIN  60
EKMRCLQDLV PGCYKAMGTA VLLDEIINYV QSLQNQIEFL SMKLSAASAV NDFKSDAEAA  120
AARWLARSVL RCPSTSSGDG VPGWDQAAPP SADTASG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090153.11e-50PREDICTED: transcription factor BEE 1-like
SwissprotQ8GZ135e-46BEE1_ARATH; Transcription factor BEE 1
TrEMBLA0A022R6512e-49A0A022R651_ERYGU; Uncharacterized protein
STRINGSolyc12g036470.1.13e-48(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15639615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.12e-46bHLH family protein